diff --git a/template/Makefile.in b/template/Makefile.in
index 74ef5a8..08a02ad 100644
--- a/template/Makefile.in
+++ b/template/Makefile.in
@@ -40,6 +40,7 @@ calfbox:
 
 clean:
 	cd template/calfbox && make distclean && rm -rf build
+	cd template/calfbox && rm -rf .deps/ Makefile.in aclocal.m4 autom4te.cache/ compile config.guess config.h.in config.h.in~ config.sub configure depcomp install-sh ltmain.sh missing
 	rm -rf build/
 	rm -rf sitepackages
 	rm -f "$(PROGRAM).bin"